Software

Computational Software

• DiffMEM: tool for Non-Linear Mixed Effect model optimization in a frequentist and Bayesian context built specifically for complex models (mostly ordinary/partial differential equations) and performance.

• Severo.jl: Software package for scalable analysis and exploration of single-cell RNA-seq datasets

Various

• PAPI.jl: Julia bindings for the PAPI hardware performance counters library and high-level interface
• MPIExecutor.jl: Parallel programming model with futures build on MPI
• gdb_eigen.py: gdb support for Eigen types and routines to read/write memory to hdf5